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All analyses / WGS

Bacterial whole-genome analysis.

Take paired-end bacterial reads through quality control, assembly, annotation and genomic characterization. Review the evidence in one structured report.

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2 matched FASTQ files · R1 + R2 · up to 10 GiB each

Research use only. Not for clinical or diagnostic use.

Assembly & annotationReference example
Circular arrangement of an 88-contig bacterial assembly, with forward and reverse coding-sequence tracks and measured GC windows. This is not a closed chromosome.
ContigsForward CDSReverse CDSGC content
Staphylococcus cohnii · GCF_000513495.2
Reference-derived synthetic reads. Fragmented assembly shown in a circular layout.
InputPaired-end FASTQ
Accepted formats.fastq / .fq / .gz
DeliveryCurated report + results ZIP
View scientific methods

WORKFLOW / 01—08

A defined workflow. Traceable at every step.

Each submission moves through defined stages, with progress available by submission ID.

  1. 01ReadsR1 + R2
  2. 02QualityInspect + trim
  3. 03PrepareClean reads
  4. 04AssembleContigs
  5. 05AssessAssembly QC
  6. 06AnnotateGenome features
  7. 07CharacterizeGenomic traits
  8. 08DeliverReport + files

ANALYSIS CAPABILITIES

Know what your analysis includes

Outputs are organized so researchers can inspect both the findings and the evidence behind them.

01Core genome processing

Read quality and processing
FastQC · MultiQC · fastp
Genome-based taxonomy
Optional matched-reference FastANI · manual external TYGS*
Assembly and quality
SPAdes · QUAST · BUSCO
Genome annotation
Bakta

02Advanced characterization

Resistance and virulence
ResFinder · CARD/RGI · VFDB
Biosynthetic gene clusters
antiSMASH
Visualization and delivery
Circos · integrated report · scientific ZIP

*FastANI requires a matched local reference panel. TYGS is a separate manual service. Modules run when their tools and reference data are configured; the report identifies unavailable modules.

What you receive.

A structured set of analysis outputs, research files and documented findings generated by the WGS workflow.

Quality assessment
HTML · JSONRead quality, processing summaries and assembly assessment.
Assembled genome
FASTAAssembled contig sequences for downstream research.
Genome annotation
GFF3 · GBFF · FAA · FFNFeature coordinates, annotated sequence and predicted proteins.
Genomic findings
JSON · TSVAvailable resistance / virulence evidence with module status.
Genome visualization
SVG · PNG · when generatedAssembly-based figures when the visualization module succeeds.
Report & results package
HTML · ZIPIntegrated report, research files, summaries and an integrity manifest.

Findings and figures depend on enabled modules and available databases. Unavailable outputs are identified in the report.

View sample results

READY TO BEGIN

Submit your paired reads.

Keep a submission ID to follow validation, analysis and delivery.

FASTQ R1 / R2SUBMISSION TRACKINGCURATED REPORT
ASTRONEXUS / NEW ANALYSIS Start WGS analysis Paired bacterial reads