Genomes,
in perspective.

Bacterial whole-genome sequencing and comparative genomics, with evidence you can inspect.

Analyse paired reads, compare assembled genomes, or investigate annotated genes. Built around your research question.

For research use only.
Not for clinical or diagnostic use.

Your question.
Your workflow.

Choose the analysis that matches your research question.

From reads to a bacterial genome.

Assess sequence quality, assemble your reads, annotate the resulting contigs and review research-ready genomic evidence.

Input
Two paired FASTQ files: R1 and R2.
Compressed or uncompressed; up to 10 GiB per file.
Output
QC summaries, assembly FASTA, genome annotation, available AMR / virulence findings and a research report.

Analysis workflow

  1. Quality controlFastQC · MultiQC
  2. Preprocessingfastp
  3. AssemblySPAdes · QUAST
  4. AnnotationBakta